msa: an R package for multiple sequence alignment
نویسندگان
چکیده
منابع مشابه
msa: an R package for multiple sequence alignment
UNLABELLED Although the R platform and the add-on packages of the Bioconductor project are widely used in bioinformatics, the standard task of multiple sequence alignment has been neglected so far. The msa package, for the first time, provides a unified R interface to the popular multiple sequence alignment algorithms ClustalW, ClustalOmega and MUSCLE. The package requires no additional softwar...
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Multiple sequence alignment (MSA) is an NP-complete and important problem in bioinformatics. In this paper, we have proposed iterative alignment method using a Genetic Algorithm for Multiple Sequence Alignment, named TSGA-MSA. The steps in this algorithm are discussed in details and its performances on a set of benchmark datasets from the BAliBase 2. 0 are analysed. The experimental results, th...
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Genetic algorithms are relatively new optimization technique that can be applied to various problems, including those that are NP-hard. We have proposed a new web based tool MSA-GA (Multiple Sequence Alignment tool based on Genetic Approach) is developed for aligning the DNA sequences in order to find out the alignment of sequence. With this tool we have developed two different Genetic crossove...
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متن کاملMultiple Sequence Alignment Multiple Sequence Alignment
An algorithm for progressive multiple alignment of sequences with insertions " , 1. Introduction The problem of sequence alignment is to find the patterns of sequence conservation and similarity between pairs or sets of given sequences. In biological contexts, similarity between biological sequences usually amounts to either functional or structural similarities or divergence from a common ance...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2015
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btv494